*Microbiomes At Guelph team members indicated in bold. Please note this is not an exhaustive list of publications.
2023
- Chapuis, R. J., Becker, A. A., Dowling, P. M., & Weese, J. S. (2023). Characterisation of faecal microbiota in horses medicated with oral doxycycline hyclate. Equine Veterinary Journal, 55(1), 129-141.
- Chiasson, M., Kirk, M., & Huyben, D. (2023). Microbial control during the incubation of rainbow trout (Oncorhynchus mykiss) eggs exposed to humic acid. Frontiers in Aquaculture, 2, 1.
- Colgan, P., Rieke, E. L., Nadeem, K., Moorman, T. B., Soupir, M. L., Howe, A., & Ricker, N. (2023). Impact of Swine and Cattle Manure Treatment on the Microbial Composition and Resistome of Soil and Drainage Water. Microorganisms, 11(1), 17.
- Fruci, M., Kithama, M., Kiarie, E. G., Shao, S., Liu, H., Topp, E., & Diarra, M. (2023). Effects of partial or complete replacement of soybean meal with commercial black solider fly larvae (Hermetia illucens) meal on growth performance, cecal short chain fatty acids, and excreta metabolome of broiler chickens. Poultry Science, 102463.
- MacNicol, J. L., Renwick, S., Ganobis, C. M., Allen-Vercoe, E., Weese, J. S., & Pearson, W. (2023). The influence of a probiotic/prebiotic supplement on microbial and metabolic parameters of equine cecal fluid or fecal slurry in vitro. Journal of Animal Science, skad034.
- Zakia, L. S., MacNicol, J. L., Borges, A. S., Yu, S., Boerlin, P., Gomez, D. E., … & Arroyo, L. G. (2023). Fecal prevalence of Clostridium innocuum DNA in healthy horses and horses with colitis. Anaerobe, 79, 102681.
2022
- Attai, H., Wilde, J., Liu, R., Chopyk, J., Garcia, A. G., Allen-Vercoe, E., & Pride, D. (2022). Bacteriophage-Mediated Perturbation of Defined Bacterial Communities in an In Vitro Model of the Human Gut. Microbiology Spectrum, e01135-22.
- Ayoub, C., Arroyo, L. G., MacNicol, J. L., Renaud, D., Weese, J. S., & Gomez, D. E. (2022). Fecal microbiota of horses with colitis and its association with laminitis and survival during hospitalization. Journal of Veterinary Internal Medicine, 36(6), 2213-2223.
- Ayoub, C., Arroyo, L. G., Renaud, D., Weese, J. S., & Gomez, D. E. (2022). Fecal Microbiota Comparison Between Healthy Teaching Horses and Client-Owned Horses. Journal of Equine Veterinary Science, 118, 104105.
- Davis, E. M., & Weese, J. S. (2022). Oral Microbiome in Dogs and Cats: Dysbiosis and the Utility of Antimicrobial Therapy in the Treatment of Periodontal Disease. Veterinary Clinics: Small Animal Practice, 52(1), 107-119.
- Gomez, D. E., Wong, D., MacNicol, J., & Dembek, K. (2022). The fecal bacterial microbiota of healthy and sick newborn foals. Journal of Veterinary Internal Medicine.
- Liu, N. N., Zhao, X., Tan, J. C., Liu, S., Li, B. W., Xu, W. X., … Shapiro, R.,… & Wang, H. (2022). Mycobiome Dysbiosis in Women with Intrauterine Adhesions. Microbiology Spectrum, e01324-22.
- MacNicol, J. L., Renwick, S., Ganobis, C. M., Allen-Vercoe, E., Weese, J. S., & Pearson, W. (2022). A Comparison of Methods to Maintain the Equine Cecal Microbial Environment In Vitro Utilizing Cecal and Fecal Material. Animals, 12(15), 2009.
- Niazy, M., Hill, S., Nadeem, K., Ricker, N., & Farzan, A. (2022). Compositional analysis of the tonsil microbiota in relationship to Streptococcus suis disease in nursery pigs in Ontario. Animal microbiome, 4(1), 1-13.
- Sulit, A. K., Daigneault, M., Allen-Vercoe, E., Silander, O. K., Hock, B., McKenzie, J., … & Purcell, R. (2022). Bacterial lipopolysaccharide modulates immune response in the colorectal tumor microenvironment. bioRxiv.
- Sorbara, M. T., & Pamer, E. G. (2022). Microbiome-based therapeutics. Nature Reviews Microbiology, 20(6), 365-380.
- Trischler, R., Roth, J., Sorbara, M. T., Schlegel, X., & Müller, V. (2022). A functional Wood‐Ljungdahl pathway devoid of a formate dehydrogenase in the gut acetogens Blautia wexlerae, Blautia luti and beyond. Environmental Microbiology.
2021
- Das, Q., Shay, J., Gauthier, M., Yin, X., Hasted, T. L., Ross, K., … Warriner, K., … & Diarra, M. S. (2021). Effects of vaccination against coccidiosis on gut microbiota and immunity in broiler fed bacitracin and berry pomace. Frontiers in Immunology, 1874.
- Huyben, D., Chiasson, M., Lumsden, J. S., Pham, P. H., & Chowdhury, M. A. K. (2021). Dietary microencapsulated blend of organic acids and plant essential oils affects intestinal morphology and microbiome of rainbow trout (Oncorhynchus mykiss). Microorganisms, 9(10), 2063.
- O’Shaughnessy‐Hunter, L. C., Yu, A., Rousseau, J. D., Foster, R. A., & Weese, J. S. (2021). Longitudinal study of the cutaneous microbiota of healthy horses. Veterinary Dermatology, 32(5), 467-e128.
- Renwick, S., Ganobis, C. M., Elder, R. A., Gianetto-Hill, C., Higgins, G., Robinson, A. V., … & Allen-Vercoe, E. (2021). Culturing human gut microbiomes in the laboratory. Annual Review of Microbiology, 75, 49-69.
- Stothart, M. R., & Newman, A. E. (2021). Shades of grey: host phenotype dependent effect of urbanization on the bacterial microbiome of a wild mammal. Animal microbiome, 3(1), 1-16.
- Wang, Y., Liu, Y., Polic, I. I., Matheyambath, A. C., & LaPointe, G. (2021). Modulation of human gut microbiota composition and metabolites by arabinogalactan and Bifidobacterium longum subsp. longum BB536 in the Simulator of the Human Intestinal Microbial Ecosystem (SHIME®). Journal of Functional Foods, 87, 104820.
2020
- Greyson-Gaito, C. J., Bartley, T. J., Cottenie, K., Jarvis, W. M., Newman, A. E., & Stothart, M. R. (2020). Into the wild: microbiome transplant studies need broader ecological reality. Proceedings of the Royal Society B, 287(1921), 20192834.
- Huyben, D., Rimoldi, S., Ceccotti, C., Montero, D., Betancor, M., Iannini, F., & Terova, G. (2020). Effect of dietary oil from Camelina sativa on the growth performance, fillet fatty acid profile and gut microbiome of gilthead Sea bream (Sparus aurata). PeerJ, 8, e10430.
- Lyu, Y., Su, C., Verbrugghe, A., Van de Wiele, T., Martos Martinez-Caja, A., & Hesta, M. (2020). Past, present, and future of gastrointestinal microbiota research in cats. Frontiers in Microbiology, 11, 1661.
- Mistry, P., Reitz, C. J., Khatua, T. N., Rasouli, M., Oliphant, K., Young, M. E., … & Martino, T. A. (2020). Circadian influence on the microbiome improves heart failure outcomes. Journal of Molecular and Cellular Cardiology, 149, 54-72.
- Nair, S., Farzan, A., Weese, J. S., Poljak, Z., & Friendship, R. M. (2020). Effect of flavophospholipol on fecal microbiota in weaned pigs challenged with Salmonella Typhimurium. Porcine health management, 6(1), 1-14.
- Tal, M., Weese, J. S., Gomez, D. E., Hesta, M., Steiner, J. M., & Verbrugghe, A. (2020). Bacterial fecal microbiota is only minimally affected by a standardized weight loss plan in obese cats. BMC veterinary research, 16(1), 1-15.
